Forschungsbericht 2019
Medizintechnische Systeme E-1
Leitung: Prof. Dr.-Ing. Alexander Schlaefer
Institut auf TORE
Institutswebsite
Publikationen
- Deep transfer learning methods for colon cancer classification in confocal laser microscopy images - Article
Gessert, Nils Thorben; Bengs, Marcel; Wittig, Lukas; Drömann, Daniel; Keck, Tobias; Schlaefer, Alexander; Ellebrecht, David B.
International Journal of Computer Assisted Radiology and Surgery 11 (14): 1837-1845 (2019-11-01)
Publisher DOI
- Skin Lesion Classification Using Ensembles of Multi-Resolution EfficientNets with Meta Data - Article
Gessert, Nils Thorben; Nielsen, Maximilian; Shaikh, Mohsin; Werner, René; Schlaefer, Alexander
ISIC Skin Lesion Classification Challenge, MICCAI (2019-10-01)
- Optimizing robot motion for robotic ultrasound-guided radiation therapy - Article
Schlüter, Matthias; Fürweger, Christoph; Schlaefer, Alexander
Physics in Medicine & Biology 64 (19): Art. No. 195012 (2019)
Open Access Publisher DOI
- Needle Tip Force Sensor for Medical Applications - inProceedings
Chadda, Romol; Wismath, Sonja; Hessinger, Markus; Schafer, Niklas; Schlaefer, Alexander; Kupnik, Mario
IEEE Sensors: 8956754 (2019-10)
Publisher DOI
- Spatio-temporal deep learning models for tip force estimation during needle insertion - Article
Gessert, Nils Thorben; Priegnitz, Torben; Saathoff, Thore; Antoni, Sven-Thomas; Meyer, David; Hamann, Moritz Franz; Jünemann, Klaus Peter; Otte, Christoph; Schlaefer, Alexander
International Journal of Computer Assisted Radiology and Surgery 9 (14): 1485-1493 (2019-09-01)
Publisher DOI
- Towards Deep Learning-Based EEG Electrode Detection Using Automatically Generated Labels - Other
Gessert, Nils Thorben; Gromniak, Martin; Bengs, Marcel; Matthäus, Lars; Schlaefer, Alexander
- Left Ventricle Quantification Using Direct Regression with Segmentation Regularization and Ensembles of Pretrained 2D and 3D CNNs - inProceedings
Gessert, Nils Thorben; Schlaefer, Alexander
MICCAI Workshop STACOM (2019-08-12)
- Analysis and optimization of the robot setup for robotic-ultrasound-guided radiation therapy - Article
Schlüter, Matthias; Gerlach, Stefan; Fürweger, Christoph; Schlaefer, Alexander
International Journal of Computer Assisted Radiology and Surgery 8 (14): 1379-1387 (2019-08-01)
Publisher DOI
- Deep Reinforcement Learning for Mobile Robot Navigation - inProceedings
Gromniak, Martin; Stenzel, Jonas
Asia-Pacific Conference on Intelligent Robot Systems, ACIRS 2019: 8935944 (2019-07)
Publisher DOI
- Data Representations for Segmentation of Vascular Structures Using Convolutional Neural Networks with U-Net Architecture - inProceedings
Bargsten, Lennart; Wendebourg, Mareike; Schlaefer, Alexander
Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC): 989-992 (2019-07)
Publisher DOI
- Quantitative Analysis of 3D Artery Volume Reconstructions Using Biplane Angiography and Intravascular OCT Imaging - inProceedings
Latus, Sarah; Neidhardt, Maximilian; Lutz, Matthias; Gessert, Nils Thorben; Frey, Norbert; Schlaefer, Alexander
Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC): 6004-6007 (2019-07)
Publisher DOI
- Endoscopic versus volumetric OCT imaging of mastoid bone structure for pose estimation in minimally invasive cochlear implant Radiosurgery - Article
Laves, Max-Heinrich; Latus, Sarah; Bergmeier, Jan; Ortmaier, Tobias; Kahrs, Lüder A.; Schlaefer, Alexander
International journal of computer assisted radiology and surgery S1 (14): 1-194 (2019-06-01)
Publisher DOI
- Bimodal intravascular volumetric imaging combining OCT and MPI - Article
Latus, Sarah; Griese, Florian; Schlüter, Matthias; Otte, Christoph; Möddel, Martin; Gräser, Matthias; Saathoff, Thore; Knopp, Tobias; Schlaefer, Alexander
Medical Physics 3 (46): 1371-1383 (2019-03-01)
Publisher DOI
- Towards automatic lesion classification in the upper aerodigestive tract using OCT and deep transfer learning methods - Other
Gessert, Nils Thorben; Schlüter, Matthias; Latus, Sarah; Volgger, Veronika; Betz, Christian Stephan; Schlaefer, Alexander
Publisher DOI
- Feasibility of Colon Cancer Detection in Confocal Laser Microscopy Images Using Convolution Neural Networks - inProceedings
Gessert, Nils; Wittig, Lukas; Drömann, Daniel; Keck, Tobias; Schlaefer, Alexander; Ellebrecht, David B.
Informatik aktuell : 327-332 (2019-02)
Publisher DOI
- Automatic Plaque Detection in IVOCT Pullbacks Using Convolutional Neural Networks - Article
Gessert, Nils Thorben; Lutz, Matthias; Heyder, Markus; Latus, Sarah; Leistner, David M.; Abdelwahed, Youssef S.; Schlaefer, Alexander
IEEE transactions on medical imaging 2 (38): 426-434 (2019-02)
Publisher DOI
- Optimizing configurations for 7-DoF robotic ultrasound guidance in radiotherapy of the prostate - inProceedings
Schlüter, Matthias; Fürweger, Christoph; Schlaefer, Alexander
Publisher DOI
- Feasibility of a markerless tracking system based on optical coherence tomography - inProceedings
Schlüter, Matthias; Otte, Christoph; Saathoff, Thore; Gessert, Nils Thorben; Schlaefer, Alexander
Progress in Biomedical Optics and Imaging - Proceedings of SPIE (10951): 1095107 (2019)
Publisher DOI
- Efficient neural architecture search on low-dimensional data for OCT image segmentation - inProceedings
Gessert, Nils Thorben; Schlaefer, Alexander
MIDL 2019 Conference (2019)
Open Access
- Towards OCT-navigated tissue ablation with a picosecond infrared laser (PIRL) and mass-spectrometric analysis - inProceedings
Schlüter, Matthias; Fuh, Manka M.; Maier, Stephanie; Otte, Christoph; Kiani, Parnian; Hansen, Nils-Owe; Miller, R. J. Dwayne; Schlüter, Hartmut; Schlaefer, Alexander
Publisher DOI
- Fully automated longitudinal segmentation of new or enlarging multiple sclerosis (MS) lesions using 3D convolutional neural networks - inProceedings
Krüger, Julia; Opfer, Roland; Gessert, Nils Thorben; Schippling, Sven; Ostwaldt, Ann-Christin; Walker-Egger, Christine; Manogaran, Paraveena; Schlaefer, Alexander
Clinical neuroradiology, September 2019, Volume 29, Supplement 1, pp. 1–129
Publisher DOI
- Fully automated lesion segmentation using heavily trained 3D convolutional neural networks are equivalent to manual expert segmentations - Poster
Krüger, Julia; Opfer, Roland; Gessert, Nils Thorben; Ostwaldt, Ann-Christin; Walker-Egger, Christine; Manogaran, Paraveena; Wang, C.; Barnett, M.; Schlaefer, Alexander; Schippling, Sven
Publisher DOI
- Bioresorbable scaffold visualization in IVOCT images using CNNs and weakly supervised localization - inProceedings
Gessert, Nils; Latus, Sarah; Abdelwahed, Youssef S.; Leistner, David M.; Lutz, Matthias; Schlaefer, Alexander
Progress in Biomedical Optics and Imaging - Proceedings of SPIE (10949): (2019)
Publisher DOI
- Deep Learning in der SPECT und PET des Gehirns - Article
Buchert, Ralph; Krüger, Julia; Gessert, Nils Thorben; Lehnert, Wencke; Apostolova, Ivayla; Klutmann, Susanne; Schlaefer, Alexander
Der Nuklearmediziner 02 (42): 118-132 (2019)
Publisher DOI
- A quantitative metric temporal logic for execution-time constrained verification - inProceedings
Lehmann, Sascha; Antoni, Sven-Thomas; Schlaefer, Alexander; Schupp, Sibylle
Lecture Notes in Computer Science (11615 LNCS): 170-189 (2019)
Publisher DOI
- Two-path 3D CNNs for calibration of system parameters for OCT-based motion compensation - inProceedings
Gessert, Nils Thorben; Gromniak, Martin; Schlüter, Matthias; Schlaefer, Alexander
Progress in Biomedical Optics and Imaging - Proceedings of SPIE (10951): 1095108 (2019)
Publisher DOI
- Machbarkeit CNN-basierter Erzeugung von Kandidatenstrahlen für Radiochirurgie der Prostata - inProceedings
Gerlach, Stefan; Schlüter, Matthias; Fürweger, Christoph; Schlaefer, Alexander
CURAC 2019 - Tagungsband : 18. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie e.V. ; 19.-21. September 2019, Reutlingen, Seite 128 - 129
- A New Setup for Markerless Motion Compensation in TMS by Relative Head Tracking with a Small-Scale TOF Camera - inProceedings
Gromniak, Martin; Brendes, Christian; Schlaefer, Alexander
CURAC, Reutlingen: 205-210 (2019)
- An online model checking approach to soft-tissue detection for rupture - inProceedings
Antoni, Sven-Thomas; Lehmann, Sascha; Schupp, Sibylle; Schlaefer, Alexander
CURAC 2019 - Tagungsband : 18. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie e.V. ; 19.-21. September 2019, Reutlingen, Seite 83 - 88 (2019)
- Skin Lesion Classification Using CNNs with Patch-Based Attention and Diagnosis-Guided Loss Weighting - Article
Gessert, Nils Thorben; Sentker, Thilo; Madesta, Frederic; Schmitz, Rüdiger; Kniep, Helge; Baltruschat, Ivo-Matteo; Werner, René; Schlaefer, Alexander
IEEE Transactions on Biomedical Engineering (in press): 1-1 (2019)
Publisher DOI
- 4D spatio-temporal deep learning with 4D fMRI data for autism spectrum disorder classification - inProceedings
Bengs, Marcel; Gessert, Nils Thorben; Schlaefer, Alexander
MIDL 2019 Conference (2019)
Open Access
- IVUS-Simulation for Improving Segmentation Performance of Neural Networks via Data Augmentation - inProceedings
Sommer, Franziska; Bargsten, Lennart; Schlaefer, Alexander
CURAC 2019 - Tagungsband : 18. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie e.V. ; 19.-21. September 2019, Reutlingen, Seite 47-51
Projekte
- I³-Junior-Project - Joint Medical Image-Reconstruction and Processing for High-Dimensional Data using Deep Learning
Technische Universität Hamburg; Laufzeit 2019 - 2020
Projektleitung: Baltruschat, Ivo-Matteo; Gessert, Nils Thorben
- I³-Lab - Modell-gestütztes maschinelles Lernen für die Weichgewebsmodellierung in der Medizin
Technische Universität Hamburg; Laufzeit 2019 - 2022
Projektleitung: Schupp, Sibylle; Schlaefer, Alexander; Hoffmann, Norbert; Cyron, Christian J.
- MALEKA: Maschinelle Lernverfahren für die kariovaskuläre Bildgebung auf der Grundlage des Programms für Innovation (PROFI) - Modul PROFI Transfer Plus
Hamburgische Investitions- und Förderbank; Laufzeit 2018 - 2020
Projektleitung: Schlaefer, Alexander
Mitarbeitende: Bargsten, Lennart; Wendebourg, Mareike
- FASOD - Fortschrittliche Algorithmen für die EEG Aufnahme mit Trockenhauben durch schnelle optische Digitalisierung der Elektrodenpositionen
Bundesministerium für Wirtschaft und Energie; Laufzeit 2018 - 2020
Projektleitung: Schlaefer, Alexander
- Kardio-vaskuläre Magnetresonanztomographie am bewegten Fetus
Forschungszentrum Medizintechnik Hamburg; Laufzeit 2017 - 2019
Projektleitung: Antoni, Sven-Thomas; Schlaefer, Alexander
- OCT basierte Navigation für die Gewebeablation und Charakterisierung mit einem PIR-Laser - Untersuchung einer multimodalen Navigation für die sichere Gewebeablation
Forschungszentrum Medizintechnik Hamburg; Laufzeit 2017 - 2019
Projektleitung: Schlaefer, Alexander
Mitarbeitende: Otte, Christoph
- Robotisierte Ultraschall-gestützte Bildgebung zur Echtzeit-Bewegungskompensation in der Strahlentherapie (RobUST)
Deutsche Forschungsgemeinschaft (DFG); Laufzeit 2016 - 2020
Projektleitung: Schlaefer, Alexander
- Mechatronisch geführte Mikronavigation von Nadeln in Weichgewebe
Deutsche Forschungsgemeinschaft (DFG); Laufzeit 2014 - 2020
Projektleitung: Schlaefer, Alexander
Kooperationspartner
- Europäisches Cyberknife Zentrum München
- Universität zu Lübeck
- Universitätsklinikum Hamburg-Eppendorf (UKE)
- Universitätsklinikum Schleswig-Holstein
- Philips GmbH Innovative Technologies
- eemagine Medical Image Solutions GmbH
- jung diagnostics GmbH