Niklas Hackelberg, M.Sc.

Fraunhofer-Einrichtung für Individualisierte und Zellbasierte Medizintechnik IMTE
Mönkhofer Weg 239a
23562 Lübeck
- Postanschrift -

Technische Universität Hamburg (TUHH)
Institut für Biomedizinische Bildgebung
Gebäude E, Raum 4.044
Am Schwarzenberg-Campus 3
21073 Hamburg

E-Mail: niklas.hackelberg(at)imte.fraunhofer.de
E-Mail: niklas.hackelberg(at)tuhh.de
ORCID: https://orcid.org/0000-0002-0976-9049

Research Interests

  • Magnetic Particle Imaging
  • Image reconstruction in MPI, MRI and CT
  • Parallel computing in Julia

Curriculum Vitae

Niklas Hackelberg is a PhD student in the group of Tobias Knopp for Biomedical Imaging at the University Medical Center Hamburg-Eppendorf and the Hamburg University of Technology. In addition, he works as a software engineer at the Fraunhofer Research Institution for Individualized and Cell-Based Medical Engineering IMTE in Lübeck. He studied Computer Science at the Technical University of Hamburg from 2014 to 2021, where he earned his Master's degree with a thesis on "Development of a Scalable and Real-Time Capable Data Acquisition System for Magnetic Particle Imaging."  

Journal Publications

[191082]
Title: Learning CT Segmentation from Label Masks Only.
Written by: A. Tsanda, H. Nickisch, T. Wissel, T. Klinder, T. Knopp, and M. Grass
in: <em>Medical Imaging with Deep Learning (MIDL 2024)</em>. (2024).
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Note: inproceedings

Abstract: Training segmentation models for CT scans in the absence of input data is a challenging problem. Methods based on generative adversarial networks translate images from other modalities but still require additional data and training. Synthesizing images directly from segmentation masks using heuristics can overcome this limitation. However, capabilities for model generalization remain underexplored for these methods. In this study, we generate synthetic data for liver segmentation using organ labels and prior CT knowledge. Ground truth labels serve as a source of information about global structures and are filled with artificial textures in various settings. Segmentation models trained on synthetic data demonstrate sufficient generalization to real CT data, highlighting a perspective of a simple yet powerful approach to data bootstrapping.

Conference Proceedings

[191082]
Title: Learning CT Segmentation from Label Masks Only.
Written by: A. Tsanda, H. Nickisch, T. Wissel, T. Klinder, T. Knopp, and M. Grass
in: <em>Medical Imaging with Deep Learning (MIDL 2024)</em>. (2024).
Volume: Number:
on pages:
Chapter:
Editor:
Publisher:
Series:
Address:
Edition:
ISBN:
how published:
Organization:
School:
Institution:
Type:
DOI:
URL: https://openreview.net/forum?id=u6pyk0RIpL
ARXIVID:
PMID:

[www]

Note: inproceedings

Abstract: Training segmentation models for CT scans in the absence of input data is a challenging problem. Methods based on generative adversarial networks translate images from other modalities but still require additional data and training. Synthesizing images directly from segmentation masks using heuristics can overcome this limitation. However, capabilities for model generalization remain underexplored for these methods. In this study, we generate synthetic data for liver segmentation using organ labels and prior CT knowledge. Ground truth labels serve as a source of information about global structures and are filled with artificial textures in various settings. Segmentation models trained on synthetic data demonstrate sufficient generalization to real CT data, highlighting a perspective of a simple yet powerful approach to data bootstrapping.