Open MPI Data

The goal of the OpenMPIData initiative is to provide MPI measurement data to those interested in MPI research. Initially, the project included only the first few datasets, covering the most interesting cases for getting started with MPI. More recently, we have started to make the measurement data from our most recent publications available to the public. We are proud that the OpenMPIData has already been noticed by several research groups, e.g. to develop and evaluate new reconstruction algorithms.

We invite those with MPI hardware to share their data, and those interested in MPI research to contribute by using this data in their research. The project is hosted on GitHub and a detailed description is available here. To contribute, simply open an issue on the project's GitHub page.

All data are stored in the MPI Data Format (MDF), which provides a common data format for the storing of MPI raw, calibration, and reconstruction data, and are made available under a Creative Commons license CC-BY-4.0.

Reconstruction results of the shape phantom 3D dataset

Publications

Publications

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Title: OpenMPIData: An initiative for freely accessible magnetic particle imaging data.
Written by: T. Knopp, P. Szwargulski, F. Griese, M. Gräser
in: <em>Data in Brief</em>. 2 (2020).
Volume: <strong>28</strong>. Number:
on pages: 104971
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DOI: https://doi.org/10.1016/j.dib.2019.104971
URL: https://www.sciencedirect.com/science/article/pii/S2352340919313265?via%3Dihub
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Note: article, opendata

Abstract: Magnetic particle imaging is a tomographic imaging technique capable of measuring the local concentration of magnetic nanoparticles that can be used as tracers in biomedical applications. Since MPI is still at a very early stage of development, there are only a few MPI systems worldwide that are primarily operated by technical research groups that develop the systems themselves. It is therefore difficult for researchers without direct access to an MPI system to obtain experimental MPI data. The purpose of the OpenMPIData initiative is to make experimental MPI data freely accessible via a web platform. Measurements are performed with multiple phantoms and different image sequences from 1D to 3D. The datasets are stored in the magnetic particle image data format (MDF), an open document standard for storing MPI data. The open data is mainly intended for mathematicians and algorithm developers working on new reconstruction algorithms. Each dataset is designed to pose a specific challenge to image reconstruction. In addition to the measurement data, computer aided design (CAD) drawings of the phantoms are also provided so that the exact dimensions of the particle concentrations are known. Thus, the phantoms can be reproduced by other research groups using additive manufacturing. These reproduced phantoms can be used to compare different MPI systems.